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OmicsBox Metagenomics Module
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Additional Information
| SKU | metagenomics |
|---|---|
| Status | Enabled |
METAGENOMICS
Taxonomic and Functional Classification, MetaAssembly and GenePredictions, Comparative Analysis
The Metagenomics Module of OmicsBox allows to combine and integrate all necessary steps for a complete microbiome data analysis in a flexible and intuitive way. Create custom pipelines for individual analysis strategies.
Quality Control And Assessment
Use FastQC and Trimmomatic to perform the quality control of your samples, to filter reads and to remove low quality bases.
Taxonomic Classification
Identify Bacteria, Archaea, Fungi, Protozoa, and Virus down to strain level with Kraken 2. Gain insights from rich visualizations and test for the differential abundance of taxa.
Metagenomic Assembly
Choose between MetaSPAdes and MEGAHIT to assemble large datasets easy and fast in the cloud.
Gene Prediction
Use FragGeneScan for plain reads and Prodigal for assembled data to identify and extract possible genes and proteins.
Functional Analysis
Obtain high-throughput functional annotations with EggNOG-Mapper and PfamScan. Results can be compared visually and differential abundance testing of functions is also available.